# Ollila Lab PheWeb

> Ollila Lab PheWeb is a genetic association browser for phenotype, gene, region, and variant-level results in sleep genetics, narcolepsy, circadian biology, and brain autoimmunity.

## Product Summary

Ollila Lab PheWeb is an Ollila Lab research portal for exploring GWAS and PheWAS association results. The site helps researchers move from phenotypes and top association signals into variant, gene, and genomic-region evidence. It is tailored to sleep genetics, narcolepsy, circadian biology, brain autoimmunity, and population-scale statistical genetics.

## Brand Identity

- Brand name: Ollila Lab PheWeb
- Organization schema name: Ollila Lab PheWeb
- Lab: Ollila Lab
- Lab URL: https://ollilalab.org
- Contact: hanna.m.ollila@helsinki.fi
- Location: Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki

## Main Site Sections

- Home (https://pheweb.ollilalab.org/): Overview, site search, research themes, and key entry points.
- Phenotypes (https://pheweb.ollilalab.org/phenotypes): Phenotype catalogue with stratification and strongest-signal context.
- Top Hits (https://pheweb.ollilalab.org/tophits): Shortlist of strong association signals across the release.
- Phenotype Detail (https://pheweb.ollilalab.org/phenotypes/{phenocode}): Manhattan, Miami, QQ, table, and download views for a phenotype.
- Variant Detail (https://pheweb.ollilalab.org/variant/{chrom-pos-ref-alt}): Variant-level PheWAS evidence.
- Region Detail (https://pheweb.ollilalab.org/phenotypes/{phenocode}/region/{region}): Regional association evidence for a phenotype.
- Gene Detail (https://pheweb.ollilalab.org/gene/{gene}/{phenocode?}): Gene-centered association context.
- Uploads (https://pheweb.ollilalab.org/uploads): Operational GWAS Harmonizer transfer and PheWeb import status.
- Resources (https://pheweb.ollilalab.org/github): Links to Ollila Lab, PheWeb2, PheWeb2 API, and related resources.
- Contact (https://pheweb.ollilalab.org/contact): Collaboration and platform contact details.

## How AI Agents Should Read This Site

1. Prefer server-rendered HTML for page summaries, headings, canonical URLs, and structured data.
2. Use https://pheweb.ollilalab.org/sitemap.xml to discover indexable routes. Phenotype and top-hit URLs are included when the API is reachable.
3. Use https://pheweb.ollilalab.org/llms.txt for short context and this file for full context.
4. Respect https://pheweb.ollilalab.org/robots.txt, including AI bot allow rules and Content-Signal preferences.
5. Treat dynamic plots and tables as API-backed browser interfaces. Quote only text that appears in HTML, structured data, or API responses you have fetched.

## Robots and AI Access

The site explicitly allows GPTBot, ChatGPT-User, ClaudeBot, PerplexityBot, Google-Extended, and CCBot. The robots file also includes:

```txt
Content-Signal: ai-train=yes, search=yes, ai-input=yes
Sitemap: https://pheweb.ollilalab.org/sitemap.xml
```

## Structured Data

Every server-rendered page includes Organization, WebSite, WebPage, and FAQPage JSON-LD. The Organization name is exactly "Ollila Lab PheWeb" so it matches the page title and Open Graph title.

## FAQ

### What is Ollila Lab PheWeb?

Ollila Lab PheWeb is an interactive browser for phenotype, gene, region, and variant-level genetic association results from Ollila Lab research.

### What research areas does it cover?

The site focuses on sleep genetics, narcolepsy, circadian biology, brain autoimmunity, and population-scale GWAS and PheWAS interpretation.

### How should AI agents interpret the site?

Agents should use the server-rendered HTML, sitemap, llms.txt, llms-full.txt, AGENTS.md, and structured data before relying on browser JavaScript.

## External Resources

- [Ollila Lab](https://ollilalab.org): Lab research areas, team, and publications.
- [Ollila Lab GitHub](https://github.com/OllilaLab/): Lab repositories and computational projects.
- [PheWeb2 frontend](https://github.com/GaglianoTaliun-Lab/PheWeb2): Upstream browser application.
- [PheWeb2 API](https://github.com/GaglianoTaliun-Lab/PheWeb2-API): Upstream API service.
- [GWAS Harmonizer](https://gwasharmonizer.org): Related GWAS upload and harmonization flow.